1. An Update on Progress and Challenges of Crop Genomes
P. Hima Kumar, N. Urmila, M. Lakshmi Narasu, and S. Anil Kumar
2. Updates on Genomic Resources for Crop Improvement
Aditya Narayan, Pragya Chitkara, and Shailesh Kumar
3. Next Generation Sequencing Technologies: Approaches and Applications for Crop Improvement
Anupam Singh, G. Ramakrishna, Tanvi Kaila, Swati Saxena, Sandhya Sharma, Ambika B. Gaikwad, M. Z. Abdin, and Kishor Gaikwad
4. Check CRISPR editing events in transgenic wheat with Next-Generation Sequencing
Junli Zhang
5. Virus Induced Gene Silencing: A Tool to Study Gene Function in Wheat
Gaganpreet Kaur Dhariwal, Raman Dhariwal, Michele Frick and Andr?Laroche
6. Common Genomic Tools and Their Implementations in Genetic Improvement of Cereals
Megha Katoch, Ajay Kumar, Simranjeet Kaur, Anuj Rana, and Avneesh Kumar
7. Protocol for Identification and Annotation of Differentially Expressed Genes Using Reference-Based Transcriptomic Approach
Jyotika Bhati, Himanshu Avashthi, Anuj Kumar, Sayanti Guha Majumdar, Neeraj Budhlakoti, and Dwijesh Chandra Mishra
8. Transcriptome Data Analysis Using a De Novo Assembly Approach
Himanshu Avashthi, Jyotika Bhati, Shikha Mittal, Ambuj Srivastava, Neeraj Budhlakoti, Anuj Kumar, Pramod Wasudeo Ramteke, Dwijesh Chandra Mishra, and Anil Kumar
9. Protocol for In-Silico Identification and Functional Annotation of Abiotic Stress Responsive MicroRNAs in Crop Plants
Anuj Kumar, Mansi Sharma, Tinku Gautam, Prabina Kumar Meher, Jyotika Bhati, Himanshu Avashthi, Neeraj Budhlakoti, Dwijesh Chandra Mishra, Ulavappa Basavanneppa Angadi, and Krishna Pal Singh
10. Functional Annotation of miRNAs in Rice Using ARMOUR
Neeti Sanan-Mishra and Kavita Goswami
11. Identification of ceRNAs in Cereal Crops: A Computational Approach
Tinku Gautam, Hemant Sharma, Rakhi Singh, and Anuj Kumar
12. Genotyping-by-Sequencing (GBS) Method for Accelerating Marker-Assisted Selection (MAS) Program
Laavanya Rayaprolu, Santosh P Deshpande, and Rajeev Gupta
13. Genomic Selection Using Bayesian Methods: Models, Software and Application
Prabina Kumar Meher, Anuj Kumar, and Sukanta Kumar Pradhan
14. Approaches of Single Cell Analysis in Crops Improvement
Upasna Srivastava and Satendra Singh
15. Genome-Wide Association Study (GWAS) for Trait Analysis in Crops
Meenu Kumari, Lakesh Muduli, Prabin Kumar Meher, and Sukanta Kumar Pradhan
16. QTL Interval Mapping for Agronomic and Quality Traits in Crops
Vijay Gahlaut, Vandana Jaiswal, and Sanjay Kumar
17. Whole Genome Bisulfite Sequencing for Detection of DNA Methylation in Crops
Vijay Gahlaut, Vandana Jaiswal, and Sanjay Kumar
18. Tools and Techniques for Genomic Imprinting
Neeraj Budhlakoti, Sayanti Guha Majumdar, Amarkant Kushwaha, Chirag Maheshwari, Muzaffar Hasan, D C Mishra, Anuj Kumar, Jyotika Bhati, and Anil Rai
19. Computational Methods for Receptor-Metabolite Interaction Studies in Crops
Anu Dalal, Ankit Singh, Gourav Choudhir, Sushil Kumar, and Anuj Kumar
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