Part I: A growing heterogeneity of T cell subsets
1. Ligand identification for Orphan MHC-agnostic T-cell receptors by whole genome CRISPR-Cas9 screening
Michael D Crowther, Mateusz Legut, Andrew K. Sewell
2. Discovery of HLA-E-presented epitopes: MHC-E/peptide binding and T cell recognition
Paula Ruibal, Kees L M C Franken, Krista E van Meijgaarden, Lucy C Walters, Andrew J McMichael, Geraldine M Gillespie, Simone A Joosten, Tom H M Ottenhoff
3. Identification of human antigen-specific T cells using class II MHC tetramer staining and enrichment
Yi-Gen Pan and Laura F. S
4. Characterization of KIR+CD8+ regulatory T cells in humans by scRNA- and TCR-seq
Jing Li, Julie Wilhelmy, Mark M. Davis
5. Detection of α-synuclein-specific T cells in Parkinson's disease
Rekha Dhanwani, Alessandro Sette, Cecilia S. Lindestam Arlehamn
Part II: TCR repertoire sequencing and antigen analysis
6. The intra-tumoural T cell receptor repertoire - steps towards a useful clinical biomarker
Gayathri Nageswaran, Suzanne Byrne, Selvaraju Veeriah, Benny Chain
7. Enriching and Characterizing T-Cell Repertoires from 3' Barcoded Single-Cell Whole Transcriptome Amplification Products
Tasneem Jivanjee, Samira Ibrahim, Sarah K. Nyquist, G. James Gatter, Joshua D. Bromley, Swati Jaiswal, Bonnie Berger, Samuel M. Behar, J. Christopher Love, Alex K. Shalek
8. Tetramer associated T cell receptor sequencing
Michael Malone, Ke-yue Ma, Shu-qi Zhang, Ning Jiang You
9. T-cell Repertoire Characterization
Anna Pasetto and Marcus Buggert
10. Characterization of mouse CD4 TCR and its targeting antigen
Wenhua Liang and Feng Wang
11. Rapid identification of MHCII-binding peptides through microsphere-assisted peptide screening (MAPS)
Luke F. Bugada, Mason R. Smith, and Fei Wen
12. A high throughput strategy for T-Cell Receptor cloning and expression
Qiong Xia, Huang Huang, and Mark M. Davis
Part III: Computational Tools for TCR repertoire analysis
13. Epitope-specific T-cell receptor data and tools in the Immune Epitope Database
William Chronister, Alessandro Sette, and Bjoern Peters
14. A Bioinformatic Framework for Dissecting the Dynamics of T cells from Single-Cell Transcriptome
Lei Zhang and Jiesheng Li
15. Grouping T-Cell Antigen Receptors by Specificity
Chunlin Wang, Huang Huang, and Mark Davis
16. Flexible Distance-Based TCR Analysis in Python with tcrdist3
Koshlan Mayer-Blackwell, Andrew Fiore-Gartland, and Paul G. Thomas
17. Multimodal T cell analysis with CoNGA
Stefan A. Schattgen, William D. Hazelton, Paul G. Thomas, and Philip Bradley
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